Mapping out the genome of sugarcane just got a little bit easier, thanks to a paper published in Nature this July. Researchers at the HudsonAlpha Institute for Biotechnology helped generate the tiling path, sequence samples and provide analysis of the complex plant.
Continue reading “HudsonAlpha researchers help create roadmap to understanding the sugarcane genome”
Huntsville, Ala. ━ A Clemson University and HudsonAlpha Institute for Biotechnology project to explore the cotton genome and how it reacts differently in micro-gravity and normal gravity has been selected as a winner in the Cotton Sustainability Challenge. The Challenge, run by the Center for the Advancement of Science in Space, and sponsored by Target Corporation, provided researcher and innovators the opportunity to propose solutions to improve crop production on Earth by sending their concepts to the International Space Station (ISS) U.S. National Laboratory.
HudsonAlpha researchers collaborated on a project led by Oak Ridge National Laboratory identifying a common set of genes that different drought-resistant plants to survive in semi-arid conditions. This discovery could play a significant role in bioengineering and creating energy crops that are tolerant to water deficits.
Read the full press release from Oak Ridge National Laboratory.
Genome analysis of early plant lineage sheds light on how plants learned to thrive on land.
Though it’s found around the world, it’s easy to overlook the common liverwort – the plant can fit in the palm of one’s hand and appears to be comprised of flat, overlapping leaves. Despite their unprepossessing appearance, these plants without roots or vascular tissues for nutrient transport are living links to the transition from the algae that found its way out of the ocean to the established multitude of land plants.
As reported in the October 5, 2017 issue of Cell, an international team including researchers at HudsonAlpha Institute for Biotechnology and the U.S. Department of Energy Joint Genome Institute (DOE JGI) analyzed the genome sequence of the common liverwort to identify genes and gene families that were deemed crucial to plant evolution and have been conserved over millions of years and across plant lineages. The work was led by researchers at Monash University in Australia and Kyoto University and Kindai University in Japan. Read more at jgi.doe.gov.
This week, HudsonAlpha Institute for Biotechnology and the University of Georgia are co-hosting CROPS 2017, a meeting focused on
genomic technologies and their use in crop improvement and breeding programs.
The three-day event attracts more than 200 attendees involved in research and breeding for a range of important crop species. PacBio was proud to be a sponsor of the conference.
Continue reading “At CROPS 2017, SMRT Sequencing powers reference plant genome assemblies”
Huntsville, Ala. — HudsonAlpha Institute for Biotechnology, in collaboration with the University of Georgia, will host the second CROPS conference June 5-8, 2017, bringing together leading genomics researchers and plant breeders from around the world.
CROPS will address the intersection of newly emerging genomic technologies and their application to crop improvement.
Continue reading “HudsonAlpha to host conference on crop improvement June 5-8”
A consortium led by Z. Jeffrey Chen of The University of Texas at Austin and Jane Grimwood and Jeremy Schmutz of HudsonAlpha Institute for Biotechnology has made publicly available a significantly improved high-quality genome sequence of Upland cotton (Gossypium hirsutum). This sequence of the species making up greater than 90% of the world’s spinnable cotton fiber builds upon previous genome sequences published in the past five years.
Continue reading “Upland cotton sequence now publicly available”
On the slopes of the Northern Rocky Mountains, the flowering mustard plant Boechera stricta is undergoing a quiet transformation – that is, evolving into a fitter species better adapted to its local environment. HudsonAlpha faculty investigator Jeremy Schmutz was part of a team led by Thomas Mitchell-Olds of Duke University who analyzed the mechanisms by which Boechera stricta living in a hybrid zone in the Northern Rocky Mountains experienced positive directional selection. Their study was published in Nature Ecology and Evolution in April 2017.
HudsonAlpha’s faculty investigators, Jeremy Schmutz and Jane Grimwood, PhD, are part of an international team of researchers who have concluded that one group coral could adapt to future climate changes because of their high genetic diversity. Schmutz and Grimwood, who are co-directors of the HudsonAlpha Genome Sequencing Center, performed the coral sequencing, helped with directions for the genome work and completed test assemblies of the data sets.
Continue reading “Coral sequencing at HudsonAlpha published in Current Biology”
The HudsonAlpha Institute for Biotechnology is generating and annotating a reference genome for the American chestnut tree in a project with The American Chestnut Foundation that aims to restore the once dominant tree to forests in the Eastern United States. We are all familiar with the opening lines of The Christmas Song: “Chestnuts roasting on an open fire …” But this collaborative project could mean that those chestnuts might once again come from an American chestnut tree.
Continue reading “Genome sequencing could save American chestnuts”